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MattWellie / automated-interpretation-pipeline

Rare Disease variant prioritisation MVP
MIT License
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Dump Peddy? #1

Open MattWellie opened 1 year ago

MattWellie commented 1 year ago

Peddy is pretty cool, but... the dependencies are insane. Considering we are only using it as a PED parser it is very heavy.

Peddy is designed to do variant analysis, and has dependencies on scipy, scikit-learn, etc. etc.

MattWellie commented 1 year ago

https://github.com/jeremymcrae/peds looks very thin