Issue with eem_coble_peaks() function

MatthiasPucher / staRdom

staRdom is a package for R to analyse fluorescence and absorbance data of dissolved organic matter (DOM).

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Issue with eem_coble_peaks() function #10

Closed Nawalbouchachi closed 4 years ago

Nawalbouchachi commented 4 years ago

Hello, I have an issue with when I run eem_coble_peaks() function. I get a warning message

This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.

followed by an error :

Error in findInterval(xp, x) : 'vec' must be sorted non-decreasingly and not contain NAs

The function stops there

I can't determine what is causing this exactly. Any suggestions

MatthiasPucher commented 4 years ago

Without seeing the data, I just have a guess: Please check the data you provide for NAs and if the wavelengths used for the coble peaks are present in the data as well. eem_coble_peaks is a function of eemR, so you might also find helpful advice here: https://github.com/PMassicotte/eemR

Nawalbouchachi commented 4 years ago

Thank you, the link was useful. There was no NAs, but it seems that I chose the wrong option to read my EEMs (from aqualog). I am not sure to understand how it really worked but it did as soon as I put "aqualog" to read my data.