MattiaPandolfoVR / MetaPhage

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Errors in downloading database #65

Open xykb86 opened 1 year ago

xykb86 commented 1 year ago

Hi developer, I was following installation instructions for MetaPhage2. When installing the databases, the following message was returned. I tried many times with the command: ./bin/python/db_manager.py -o ./db/ -m 6, and the same error message showed every time. Then I checked the db folder and only found virsorter there.

How should I fix this problem? Thank you!

πŸ“‚ Downloading bundle 2021.1: 6 databases total virsorter found: skipping πŸ“¦ Preparing to download PhiX reference πŸ“¦ Preparing to download MiniKraken πŸ“¦ Preparing to download Vibrant πŸ“¦ Preparing to download Phigaro πŸ“¦ Preparing to download vConTACT2 βœ… PhiX reference downloaded Error downloading https://warwick.s3.climb.ac.uk/ifrqmra-metaphage/v1.0/2022-01-inphared.tar.gz: <urlopen error retrieval incomplete: got only 42298052 out of 362798790 bytes> βœ… vConTACT2 downloaded tar (child): 2022-01-inphared.tar.gz: Cannot open: No such file or directory tar (child): Error is not recoverable: exiting now tar: Child returned status 2 tar: Error is not recoverable: exiting now rm: cannot remove '2022-01-inphared.tar.gz': No such file or directory

telatin commented 1 year ago

The URL is working for me, it could have been a network error. Can you try again please an let us know?

haalasz commented 3 months ago

The URL is working for me, it could have been a network error.

All these links within db_manager.py need to be replaced because it cannot be accessed (restriction outside UK???):

Except if the tool is designed for UK residents.

The ones with the Zenodo links (https://zenodo.org/records/4608203) are fine, they can be downloaded.