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MattiaPandolfoVR
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MetaPhage
GNU General Public License v3.0
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implement multiqc-fastp
#24
lazzarigioele
closed
3 years ago
0
bugfix, clean up, update flowchart
#23
lazzarigioele
closed
3 years ago
0
implement dereplication (cdhit) and reads mapping (bowtie2)
#22
lazzarigioele
closed
3 years ago
0
bugfix db_manager and add profile for "high cov" and "higher cov"
#21
lazzarigioele
closed
3 years ago
0
implement db download only if respective process if not skipped
#20
lazzarigioele
closed
3 years ago
0
implement virfinder
#19
lazzarigioele
closed
3 years ago
0
implement virsorter mod "legacy" (-> virsorter 1.0.6)
#18
lazzarigioele
closed
3 years ago
0
prepare vars for virsorter2 process
#17
lazzarigioele
closed
3 years ago
0
implement phigaro process
#16
lazzarigioele
closed
3 years ago
0
implement vcontact2 process
#15
lazzarigioele
closed
3 years ago
0
Implement vibrant (mod "legacy" working; mod "standard" not working yet)
#14
lazzarigioele
closed
3 years ago
0
implement new db_manager: more versatile and concise
#13
lazzarigioele
closed
3 years ago
0
Kraken2 if
#12
MattiaPandolfoVR
closed
3 years ago
0
run the pipeline also on Mac
#11
lazzarigioele
closed
3 years ago
0
debug quast
#10
MattiaPandolfoVR
closed
3 years ago
0
debug Quast
#9
MattiaPandolfoVR
closed
3 years ago
0
implement Quast
#8
MattiaPandolfoVR
closed
3 years ago
0
implement metaSPAdes
#7
lazzarigioele
closed
3 years ago
0
implement krona process
#6
lazzarigioele
closed
3 years ago
0
working pipeline up to bracken
#5
lazzarigioele
closed
3 years ago
0
added kraken2 with automatic db management
#4
lazzarigioele
closed
3 years ago
0
implemented phix_removal process with a first working "db" management system
#3
lazzarigioele
closed
3 years ago
0
Dbman
#2
lazzarigioele
closed
3 years ago
0
Added installation and usage instructions in the README.md
#1
lazzarigioele
closed
3 years ago
0
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