Mayrlab / scUTRquant

Bioinformatics pipeline for single-cell 3' UTR isoform quantification
https://Mayrlab.github.io/scUTRquant
GNU General Public License v3.0
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[bug] `bx_whitelist: null` doesn't work #43

Closed mfansler closed 2 years ago

mfansler commented 2 years ago

Snakemake throws an error for configs that use null value for bx_whitelist. The Snakefile is testing for empty string, which doesn't play nicely with null.

WorkflowError in line 116 of /Users/mfansler/mayrlab/git/scUTRquant/Snakefile:
Function did not return str or list of str.