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Mayrlab / scUTRquant

Bioinformatics pipeline for single-cell 3' UTR isoform quantification
https://Mayrlab.github.io/scUTRquant
GNU General Public License v3.0
14 stars 3 forks source link

snakemake all the things #51

Closed mfansler closed 6 months ago

mfansler commented 1 year ago

Currently the targets and barcodes are manually downloaded by running shell scripts. These could also be coordinated by Snakemake to automatically download whenever a particular job needs them.