Closed mfansler closed 1 year ago
The mtx_to_sce rules appear bottlenecked when loading many samples, i.e., here https://github.com/Mayrlab/scUTRquant/blob/1cf3e7b76e6d9ac72a09c400deb4cc83bc57ee3b/scripts/mtxs_to_sce_txs.R#L131-L136
mtx_to_sce
Monitoring htop shows this is not an I/O issue, so we should consider switching to bpmapply.
htop
bpmapply
The
mtx_to_scerules appear bottlenecked when loading many samples, i.e., here https://github.com/Mayrlab/scUTRquant/blob/1cf3e7b76e6d9ac72a09c400deb4cc83bc57ee3b/scripts/mtxs_to_sce_txs.R#L131-L136Monitoring
htopshows this is not an I/O issue, so we should consider switching tobpmapply.