Version 0.4.0 - Githubissues

Mayrlab / scUTRquant

Bioinformatics pipeline for single-cell 3' UTR isoform quantification

https://Mayrlab.github.io/scUTRquant

GNU General Public License v3.0

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Closed mfansler closed 6 months ago

mfansler commented 6 months ago

This merge marks the v0.4.0 release.

target and barcode downloads are part of the pipeline (resolves #51)
new exclude_unannotated_cells configuration option to export only annotated cells (resolves #59)

new Snakemake bounds of >=6.0,<8.0 (resolves #67, #71)
sample IDs used in scUTRquant appear as sample_id.sq in colData of SingleCellExperiment objects (resolves #64)

mfansler commented 6 months ago

Verified functionality on Linux and macOS for both human and mouse examples.