Adds support for H5AD (AnnData) output

Mayrlab / scUTRquant

Bioinformatics pipeline for single-cell 3' UTR isoform quantification

https://Mayrlab.github.io/scUTRquant

GNU General Public License v3.0

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Closed mfansler closed 4 months ago

mfansler commented 4 months ago

Resolves #63

Importantly makes backward compatible extensions to:

target definition: targets now have optional tx_annots_csv and gene_annots_csv slots
config definition: now includes a output_format key that supports a list with support for "sce" and "h5ad"

Tested locally.