Hello Majur Divate, I am trying to analyze my ATACseq data. I could successfully run build the genome index, but when I try to start the Data Analysis program it tells me Macs 2 version is not found, even though I have installed. When I run the configuration it tells me that macs is already installed. What can I do. Thanks

[santicerri]

when I run the configuration this appears:

Installing dependencies > >> >>>

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

FOUND: java <<<<< FOUND: bedtools <<<<< FOUND: bowtie <<<<< FOUND: bowtie2 <<<<< FOUND: cutadapt <<<<< FOUND: fastqc <<<<< FOUND: samtools <<<<< FOUND: picard <<<<< FOUND: igv <<<<< FOUND: bedGraphToBigWig <<<<<

MACS2 is already installed !

Finished <<<<<<<<<

But when I load the program it appears this: Operating System of machine :Mac OS X cutadapt: Working! bowtie: Working! bowtie2: Working! fastqc: Working! samtools: Working! MACS2 version (macs2 2.1.1.20160309) : NOT FOUND !!! Picard: Working! bedtools: Working! bedGraphToBigWig: Working! igv: Working!

There are missing dependancies! Please use configure.sh to install dependencies.

[MayurDivate]

Please use the command below to install correct MACS2 version. pip install MACS2==2.1.1.20160309 (use sudo if required)

Cheers, Mayur