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MayurDivate / GUAVASourceCode

Source code repository for GUAVA (ATAC-seq data analysis tool).
GNU General Public License v3.0
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Installed MACS2-2.1.2 but GUAVA1 trying to run MACS2 version 2.1.1.20160309 #8

Closed swc42 closed 5 years ago

swc42 commented 5 years ago

My Terminal keeps saying that it successfully installed MACS2-2.1.2 but when I try to run GUAVA to start data analysis, it keeps saying MACS2 version (macs2 2.1.1.20160309) : NOT FOUND!!!

I downloaded the other version but I can't figure out how to install it. I tried to uninstall version 2.1.2 but when I try to install version 2.1.1.20160309, it says it cannot find this version in the directory.

Requirement already satisfied: numpy in /Users/chungs1/miniconda2/lib/python2.7/site-packages (1.15.4)

Installing MACS2 > >> >>> Collecting macs2 Requirement already satisfied: numpy>=1.6 in /Users/chungs1/miniconda2/lib/python2.7/site-packages (from macs2) (1.15.4) Installing collected packages: macs2 Successfully installed macs2-2.1.2

Finished <<<<<<<<< awd2056a:GUAVA-1 chungs1$ java -jar GUAVA.jar GUAVA version 1 Operating System of machine :Mac OS X cutadapt: Working! bowtie: Working! bowtie2: Working! fastqc: Working! samtools: Working! MACS2 version (macs2 2.1.1.20160309) : NOT FOUND !!! Picard: Working! bedtools: Working! bedGraphToBigWig: Working! igv: Working!

There are missing dependancies! Please use configure.sh to install dependencies.

swc42 commented 5 years ago

I figured out how to install MACS2-2.1.1.20160309 so that GUAVA-1 runs.