Error in plot.window(...) : need finite 'xlim' values

[stefmldk]

Dear CONIPHER developers/maintainers.

CONIPHER analyses the test data without issues. Nevertheless, I have a dataset that causes CONIPHER to throw an error during plotting while in the clustering process. Some of the last lines of the stdout stream look as follows:

[1] 0 [1] "Creating human readable output" [1] "Running non-original output" [1] "Cleaning clusters" [1] "Final merging of ubiqquitous clusters" [1] "No clusters above specified thresholds" The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 The following from values were not present in x: 1A, 1, 2A, 2, 3 [1] "Using tsv data for plotting" Error in plot.window(...) : need finite 'xlim' values Calls: conipher_run ... plot.simpleClusters.raw -> plot -> plot.default -> localWindow -> plot.window In addition: There were 50 or more warnings (use warnings() to see the first 50) Execution halted

Cheers, Steffen

[arihueb]

Hi Steffen, this error could be occurring if not all chromosomes are included in the input.tsv and input_seg.tsv. We are working on updating the plotting which will hopefully provide a more robust fix to this issue.