search

McGranahanLab / CONIPHER-wrapper

8 stars 2 forks source link

Error during calculation of cluster confidence intervals #9

Closed stefmldk closed 7 months ago

stefmldk commented 7 months ago

Dear CONIPHER developers/maintainers

Thanks a lot for the software. I have come across the following error, when analysing one of my data sets:

[1] "Calculating cluster confidence intervals using bootstrapping" [1] "Number of bootstrapping replicates: 5000"

Checking for cluster merging

updating CCF values[1] "Calculating cluster confidence intervals using bootstrapping" Error in determine.cluster.nesting(pyclone = test_pyclone, prefix = prefix, : object 'prefix' not found Calls: conipher_run ... determine.cluster.nesting -> calc.pyclone.ci -> grepl In addition: There were 50 or more warnings (use warnings() to see the first 50) Execution halted

I hope it can be fixed - thanks.

Wishing you a good day, Steffen

stefmldk commented 7 months ago

After updating to the recently released new version (v.2.2.0 - by deleting and reinstalling the Conda environment) this error vanished and clustering and tree building both completed. Thanks a lot! Steffen