McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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add support for reorganizing into BIDS standard post-processing #102

Open shen4brains opened 3 years ago

shen4brains commented 3 years ago

will require dataset-specific customization of the code here: https://github.com/McIntosh-Lab-RRI/tvb-ukbb/blob/master/bb_pipeline_tools/bb_UKBB_to_BIDS_converter.py

shen4brains commented 3 years ago

BIDS specification found here: https://bids-specification.readthedocs.io/en/stable/

justinliuyuwang commented 3 years ago

add BIDS-ification:

This may require the creation of a temporary BIDS structure with symlinks pointing to the subject's files while the pipeline is running. When the pipeline is done running, a script can be run to copy-paste each sub into a new BIDs structure and delete the old structure & temp symlink BID structure (instead of the relatively riskier mv command).