cerebellum and brainstem incorrectly labelled

McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline

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cerebellum and brainstem incorrectly labelled #106

Closed shen4brains closed 3 years ago

shen4brains commented 3 years ago

[x] mask cerebllum
[x] mask brainstem
[x] create interface for dMRI seeds by inflating GM & WM masks (do not rely on bb_epi_reg outputs)

shen4brains commented 3 years ago

ADNI3 branch fixed with commit a474c70

Cam-CAN and master branch fixes forthcoming

shen4brains commented 3 years ago

master and Cam-CAN branch fixed with commits 9e49d0d and 729788a, respectively

shen4brains commented 3 years ago

Brainstem still being labelled for seeds in some subjects; fix by creating more liberal brainstem mask

shen4brains commented 3 years ago

ADNI3 branch fixed with commit 285d1530 master and Cam-CAN branch fixes still outstanding

justinliuyuwang commented 3 years ago

master branch fixed with commit 1540b0ec355295afc9df3b0ff6360a23938582a4 Cam_CAN branch to be fixed with merge with Cam-CAN_wQC where issue has been fixed with commit 60708f1c268d2fea833ad597fcde47d5b8bc7440