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McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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module gradunwarp.core.unwarp_resample_half_voxel is missing #24

Closed noahfl closed 3 years ago

noahfl commented 4 years ago

Import error found in fMRI prep section of pipeline: bb_pipeline_tools/bb_gradient_unwarp_half_voxel.py. Seems like a pretty straightforward issue of the module not being correctly pointed to. Investigating

logfile bb_prepare_rfMRI_sub-002S0413.eXXXXXXX:

+ /liberatrix/mcintosh_lab/ukbb/UK_biobank_pipeline_v_1/bb_pipeline_tools/bb_gradient_unwarp_half_voxel.py rfMRI_SBREF_vol1.nii.gz trilinear.nii.gz siemens -g /liberatrix/mcintosh_lab/ukbb/UK_biobank_pipeline_v_1/bb_data/bb_GDC_coeff.grad -n                                                                                                                                                                                                                 
Traceback (most recent call last):                                                                                                                                                                                               
  File "/liberatrix/mcintosh_lab/ukbb/UK_biobank_pipeline_v_1/bb_pipeline_tools/bb_gradient_unwarp_half_voxel.py", line 12, in <module>                                                                                          
    from gradunwarp.core.unwarp_resample_half_voxel import Unwarper                                                                                                                                                              
ModuleNotFoundError: No module named 'gradunwarp.core.unwarp_resample_half_voxel'
shen4brains commented 3 years ago

This is no longer an issue as gradient unwarping option is currently turned off in McLab implementation

Issue closed