T1 processing doesn't complete if no T2 data are available

McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline

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T1 processing doesn't complete if no T2 data are available #63

Closed shen4brains closed 3 years ago

shen4brains commented 3 years ago

The following T1-related processing intermediates are not generated if T2 data are not available:

cort_subcort_GM.nii.gz labelled_GM.nii.gz GMatlas_to_T1.nii.gz labelled_GMI.nii.gz labelled_GM.niml.lt T1_orig_QC_CNR_lower.txt T1_orig_QC_CNR_upper.txt T1_QC_COG.txt

Will need to bypass T2 processing for cases where T2 data are not available

shen4brains commented 3 years ago

This issue doesn't have to do with T2 data but with AFNI's 3dROIMaker; tested on a subject with no T2 data, runs fine and unable to replicate error. Closing the issue