Closed noahfl closed 3 years ago
Parallelizing probtrackx is possible and likely necessary. See this post here for a solution: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;daca6637.1603
this can be modelled after the array job submission by bedpostx
, where we create a .txt
file of parallel probtrackx
commands and use the -t
flag in fsl_sub
to submit it
parallelized tractography implemented in ADNI3 and PPMI branches
parallelization for Cam-CAN and master branches still needed
master branch fixed with commit 6b9ace2617ddff82ad6e03c3371637fd821a7206 Cam_CAN branch to be fixed with merge with Cam-CAN_wQC where issue has been fixed with commit 27b0cca13aa28dbdee5e1805c7fce0f385dd9852
Right now the only queue that supports probtrackx2 due to its size is bigmem_64. However bigmem_64 isn't accepting subjects in parallel and is super slow as a result. Will investigate