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McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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add subcortical volume calculations to IDP/QC subpipe #74

Closed shen4brains closed 3 years ago

shen4brains commented 3 years ago

see here for inspiration: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIRST/UserGuide#Volumetric_Analysis

see this Cam-CAN subject for an example of what we need to catch: https://mcintoshlab-rri.slack.com/files/U01CXTL3LC8/F01F4PD2KJP/notok_56.png

shen4brains commented 3 years ago

This may already exist in: https://github.com/McIntosh-Lab-RRI/tvb-ukbb/blob/master/bb_IDP/scripts/bb_IDP_T1_FIRST_vols

shen4brains commented 3 years ago

subcortical volumes are confirmed to be a part of existing IDPs from FIRST outputs