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McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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ADNI3 hi-res fMRI/dwi data may be processed instead of downsampled versions #87

Closed shen4brains closed 3 years ago

shen4brains commented 3 years ago

create a new IDP output for number of fMRI volumes so that this can be checked quickly

noahfl commented 3 years ago

Have fix; will push to ADNI3 after Cam-CAN gets it

noahfl commented 3 years ago

fmriNumVol=`${FSLDIR}/bin/fslval $1/fMRI/rfMRI_$2.nii.gz dim4 rest="$result $fmriNumVol"

noahfl commented 3 years ago

added to ADNI3: https://github.com/McIntosh-Lab-RRI/tvb-ukbb/pull/103

will be pushed to Cam-CAN once I can disentangle my working directory

noahfl commented 3 years ago

Added to master, ADNI3, and Cam-CAN

Note: Cam-CAN still needs to have multi-fMRI image implemented. working on that