incorrect reference to parcellation image in diffusion subpipe - Githubissues

McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline

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incorrect reference to parcellation image in diffusion subpipe #96

Closed shen4brains closed 3 years ago

shen4brains commented 3 years ago

replace $subjdir/T1/transforms/parcel_to_T1 with $subjdir/T1/labelled_GM in this line here: https://github.com/McIntosh-Lab-RRI/tvb-ukbb/blob/bc0d49c5298b816bb761042a8b6843d4e9b03da1/bb_diffusion_pipeline/bb_probtrackx2/bb_pre_probtrackx2#L21

apply to:

[x] master branch
[x] ADNI3 branch
[x] Cam-CAN branch

shen4brains commented 3 years ago

fixed with commits cca420a, b14ca96, and e958b36