add calculation of SC probability matrix as part of diffusion subpipe output

McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline

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Closed shen4brains closed 3 years ago

shen4brains commented 3 years ago

normalize /dMRI/probtrackx/fdt_network_matrix by /dMRI/probtrackx/waytotal

noahfl commented 3 years ago

create script that does the following:

SC_abs=np.loadtxt(subj + '/dMRI/probtrackx/fdt_network_matrix') waytotal=np.loadtxt(subj + '/dMRI/probtrackx/waytotal') SC=np.divide(SC_abs,waytotal) np.savetxt("sc.txt", SC)
integrate into bb_probtrackx2 after probtrackx2 command is run
commit to master and merge into other branches

noahfl commented 3 years ago

Implemented and added to master, ADNI3, and Cam-CAN branches