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McMahonLab / geodes

Diel transcriptomics of freshwater lakes
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Markdown question #5

Closed alexlinz closed 7 years ago

alexlinz commented 7 years ago

Why is R Markdown highlighting file names in red and how can I stop this?

sstevens2 commented 7 years ago

Does it do it in Rstudio? Might be a github+Rmd rendering oddity? It doesn't seem to be doing this in the html.

My only thoughts are that it looks like it is code blocks that are actually supposed to be bash but you've specified r instead. I'm not sure it will fix it..but you should probably change

```{r, eval = F} to ```{bash, eval = F}

in any case since the code blocks are actually bash. It might change the highlighting then and not have the files in red.

alexlinz commented 7 years ago

That worked, thanks!