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McTavishLab / extensiphy_fork

Pipeline to place taxa in a sequence alignment and phylogeny using NGS reads
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paralog vs ortholog #13

Closed jtfield closed 2 years ago

jtfield commented 4 years ago

Is there a way to implement checking for paralogs vs orthologs? Maybe a check to examine multiple copies of an assembled sequence during read alignment.

jtfield commented 2 years ago

Not efficiently at the moment.