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McTavishLab / physcraper

Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.

https://physcraper.readthedocs.io/en/main/

GNU General Public License v3.0

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Closed snacktavish closed 6 years ago

snacktavish commented 6 years ago

mkandziora commented 6 years ago

all three bugs are solved by now.

taxonomy in local blast is using the taxdump files from ncbi
identical sequences are being removed early on, if they are identical and from the same taxon
zombie taxa problem was likely solved when we solved the prune_short()/reconcile() issue