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Medical-Image-Analysis-Laboratory / mialsuperresolutiontoolkit

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.
BSD 3-Clause "New" or "Revised" License
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ENH: Improvement of the stacksOrdering #86

Closed helenelajous closed 1 year ago

helenelajous commented 3 years ago

Using the information on the number of rejected slices (in practice, number of NaN obtained from the motion index computation) in manual masks to penalize a stack in the optional stacks_ordering interface taking into account motion-related intensity artifacts like signal dropouts.

sebastientourbier commented 1 year ago

Following your suggestion, the proportion of nans has been computed in the StackOrdering interface e.g.: https://github.com/Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit/blob/e5626f6e8002eb7fc97ef0fd1377e896ec365658/pymialsrtk/interfaces/preprocess.py#L863