"BLINK only support numeric and PLINK binary format!"

Menggg / BLINK

BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions

http://www.zzlab.net/blink/index.html

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Open jeremysutherland opened 4 years ago

jeremysutherland commented 4 years ago

Hello,

I'm trying to use a HapMap file with the C version of Blink and I'm getting this error message.

"BLINK only support numeric and PLINK binary format!"

The manual of course says that HapMap files can be used though.

Any suggestions?

CheWeiChang1992 commented 1 year ago

I have a similar issue when testing blink_linux_multi_threads

By running BLINK with the command below: ./blink_linux_multi_threads --gwas --file ./demo_data/vcf/myData --vcf --out tmptest/

I got an error:

Input arguments: --gwas --file ./demo_data/vcf/myDataBLINK only support numeric and PLINK binary format!