Can't open the Pvalue file!

[biozzq]

Dear all,

I am performing GWAS with the C version of Blink and I'm getting the following error message.

**************************
*   BLINK v0.01 start   *
**************************
****************************************************************
*   BLINK is written by Meng Huang and designed by Zhiwu Zhang  *
*  Please visit zzlab.net to get more information about BLINK  *
****************************************************************

Input arguments:   --file auto --plink --gwas --parallel 6 --cycle_size 2000 --trait 2 --out TTN
one cycle include 2000 SNPs inside!

The number of traits = 1
--------
In PLINK files
number of markers is 19824366
number of individuals is 17959
--------
plink_mode is 1

The number of traits = 8

The number of marker = 19824366
--------
The number of individual = 17959
The number of marker = 19824366
--------
The number of covariates = 10

=====================================
na_length=0
===TTN===
Can't open the Pvalue file!
All the time consumption = 6521 seconds

Any suggestions will be appreciated. Thank you.

Zheng zhuqing

[hejunyi-forever]

I have the same trouble as you, did you find out the reason? @biozzq

[p-polacek]

If you're still looking for a solution, it might be that your phenotype names have spaces in them. Replace them with underscores for example.