Specify pandas version - Githubissues

Merck / BioPhi

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.

https://biophi.dichlab.org/

MIT License

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Specify pandas version #40

Open lschaus0408 opened 1 year ago

lschaus0408 commented 1 year ago

Upgrading to pandas 2.0 makes the program raise a HumannessTaskError:

If you submit a light sequence it will say it expected a heavy sequence
If you submit a heavy sequence it will say it expected a light sequence

Traced the error back to pandas 2.0 and the following AttributeError in SQLAlchemy:

AttributeError: 'Connection' object has no attribute 'exec_driver_sql'

Reverting to pandas 1.5.2 solved the issue

prihoda commented 1 year ago

Hi @lschaus0408 thanks for reporting this. I am trying to reproduce the error but it works for me with pandas 2.0.1.

I will keep this ticket open for a while. If you have time to reproduce this, would be greatly appreciated.