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Merck / BioPhi

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
https://biophi.dichlab.org/
MIT License
131 stars 44 forks source link

Internal server error: sqlite3.OperationalError) #60

Closed Immunoking closed 5 months ago

Immunoking commented 5 months ago

I am running a simplified biophi server on my machine. Once I start a humanization project I get the following error on the localhost page:

Error: (sqlite3.OperationalError) unable to open database file (Background on this error at: https://sqlalche.me/e/14/e3q8)

Could somebody help me out how to get rid of this issue?

Immunoking commented 5 months ago

Fixed this issue by rewrite the code correclty

SolaceUser commented 1 month ago

Attempted the initial install using python with Conda(BioConda)

I recieved the error: ResolvePackageNotFound:

There is an open Git issue for this dependancy error: https://github.com/Merck/BioPhi/issues/54

Attempted to resolve the issue but was unable to find a compatible version of hmmer

Upon running the docker container received the error: Error: (sqlite3.OperationalError) unable to open database file (Background on this error at: https://sqlalche.me/e/14/e3q8)

Attempted to use the latest version of the biocontainer in the repo quay.io/biocontainers/biophi:1.0.9--pyhdfd78af_2 Same result.

Is there any documentation as to how this issue was resolved?