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Merck / deepbgc

BGC Detection and Classification Using Deep Learning
https://doi.org/10.1093/nar/gkz654
MIT License
123 stars 27 forks source link

allow user-defined downloads directory #18

Closed nick-youngblut closed 4 years ago

nick-youngblut commented 4 years ago

deepbgc download (version 0.1.10) downloads all files into the user's home directory. At our institute, our home directories are very limited in size, so requiring downloading of the deepbgc-assocaited files into the home directory can lead to some significant problems for us. It would help if deepbgc download allowed users to specify the download location.

prihoda commented 4 years ago

Hi @nick-youngblut. This is possible by setting the following env variable before running deepbgc download and any further deepbgc commands:

export DEEPBGC_DOWNLOADS_DIR="/path/to/download/dir"

The directory will be created if it does not exist.

This is not really mentioned in the documentation, I will fix that in the next release version, thanks!

prihoda commented 4 years ago

Docs improved https://github.com/Merck/deepbgc/releases/ Running deepbgc download --help will now print:

usage: deepbgc download [-h] [--debug]

    Download trained models and other file dependencies to the DeepBGC downloads directory.

    By default, files are downloaded to: '/Users/prihodad/Library/Application Support/deepbgc/data'
    Set DEEPBGC_DOWNLOADS_DIR env variable to specify a different downloads directory."
nick-youngblut commented 4 years ago

Thanks for the quick fix!