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Merck / deepbgc

BGC Detection and Classification Using Deep Learning
https://doi.org/10.1093/nar/gkz654
MIT License
123 stars 27 forks source link

Deepbgc installation through conda #61

Open ebervilla opened 2 years ago

ebervilla commented 2 years ago

Hi, I hope you are doing well

I am so interested to use deepbgc in my work, I think I could get interesting results using it. I have been trying to install deepbgc using conda, but always get the following (screenshot). Do you know what can I do to solve it? Thanks in advance

Screen Shot 2021-09-23 at 21 22 27
prihoda commented 2 years ago

Hi @ebervilla can you try adding these channels and then running conda install deepbgc again? 

conda config --add channels bioconda
conda config --add channels conda-forge

From the screenshot, it looks like it's waiting, so please try waiting longer and check if you get an error message

yemilawal commented 2 years ago

Hi @ebervilla, were you finally able to install deepbgc? @prihoda Thank you for developing this tool. I'm having a similar challenge installing deepbgc with conda. I followed the instructions listed above but has been stuck at "Solving environment" for hours. Is there any work around this?. Thanks

prihoda commented 2 years ago

Hi @yemilawal it might be related to a recent change in dependencies, a new version should be ready on bioconda soon. In the meantime, please try installing using:

conda install deepbgc==0.1.27
yemilawal commented 2 years ago

That worked! Thank you @prihoda

ebervilla commented 2 years ago

Thank you very much both. I had not tried, but with the new command, I could install deepbgc without any problems.

Bests

On Wed, Sep 29, 2021 at 8:06 PM Opeyemi Lawal @.***> wrote:

That worked! Thank you @prihoda https://github.com/prihoda

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-- Eber Villa