Bugs for protein input - Githubissues

Merck / deepbgc

BGC Detection and Classification Using Deep Learning

https://doi.org/10.1093/nar/gkz654

MIT License

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Bugs for protein input #90

Open Xinpeng021001 opened 1 year ago

Xinpeng021001 commented 1 year ago

@prihoda Hi! I may find a bug that:

The output file (*.bgc.tsv) does not have "protein_ids bio_pfam_ids pfam_ids" (empyt), no matter use protein file (--protein ) or change the protein file into gbk file (deepbgc prepare).

Xinpeng021001 commented 1 year ago

Besides, if use the protein sequence as input or change the format into gbk using --prepare, the deepBGC seems to treat the whole genome as one contig, which may cause some errors.