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MerrimanLab / selectionTools

Pipeline to take VCF through to Selection Analysis.
MIT License
58 stars 25 forks source link

docker image #13

Closed stevanspringer closed 9 years ago

stevanspringer commented 9 years ago

Hi,

Thanks very much for creating this pipeline! I'm just trying to get started. I'm on OSX and need Fay&Wu's H in particular so I'll be using docker. Unfortunately I'm not able to find your images in the repository.

$ sudo docker build -t selectiondocker/selectiontools selectionTools/docker/ sends back FATA[0000] stat selectionTools/docker/: no such file or directory

$ docker search selectiontools finds nothing

$ docker search selection finds packages by thedutchselection, so it seems docker search is working.

Thanks very much for your help!

murraycadzow commented 9 years ago

Hi,

Great to hear you're interested in our pipeline! I'm still pretty new to docker so only worked out enough to make a dockerfile to build an image. I haven't committed it to the docker repository so that is why you won't find it there.

My first thought is it could be an issue with where you are running the command from. my dir structure is: /home/murray/selectionTools/docker and I ran the command sudo docker build -t selectiondocker/selectiontools selectionTools/docker/ from /home/murray/ and it worked for me

Let me know if that resolves the problem

Murray

stevanspringer commented 9 years ago

Hi Murray,

That totally makes sense. I thought the command was meant to pull it from the docker repository rather than from a local file. I should have had a look at the directory. It's installing now... aaaaand

Successfully built 28ae814fbb63

Thanks very much!

Stevan

murraycadzow commented 9 years ago

Thanks, I'll update the documentation to make this clearer

Murray