ancestral annotation on low confidence ancestral positions is always derived

MerrimanLab / selectionTools

Pipeline to take VCF through to Selection Analysis.

MIT License

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ancestral annotation on low confidence ancestral positions is always derived #16

Closed murraycadzow closed 9 years ago

murraycadzow commented 9 years ago

There is currently a problem with the ancestral annotation script where positions in the ancestral fasta file that are lower case (low confidence) are not being compared correctly leading to the position being converted to be entirely the derived state

this bug affects all versions of aa_annotate.py

working to get this fixed asap

murraycadzow commented 9 years ago

this bug is now fixed and you should at a minimum update aa_annotate.py

I have incremented both the master branch and dev branch version number to 1.1.1 from 1.1.0 to indicate this for installed versions

murraycadzow commented 9 years ago

This bug should only have affected the ihh/ihs results from the pipeline