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Mesnage-Org / pgfinder

Peptidoglycan MS1 Analysis Tool
https://mesnage-org.github.io/pgfinder
GNU Lesser General Public License v3.0
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Submit PGFinder work to JOSS #109

Closed smesnage closed 11 months ago

smesnage commented 2 years ago

No rush on this but it would be great to add another reference to the literature when we wrap up the next application. eLife and our next publication will give us scientific credentials Joss will tell reviewers we applied high coding standard.

ns-rse commented 2 years ago

The Journal of Open Source Software Submission Page has all the information we need to get started on this.

They provide a markdown and .bib template and request it works with the Open Journals PDF Generator GitHub Action.

I've added templates and the Action to the 109-joss branch and will endeavour to get a skeleton in place over the coming weeks as time permits.

TheLostLambda commented 11 months ago

Submission is done! Now, we wait...

ns-rse commented 11 months ago

What branch was noted in the submission and the current paper and documents on? I have ns-rse/109a-joss branch with joss/paper.{bib,md} on but both it and the 109-joss branch are waaay out of date and there isn't anything on main.

TheLostLambda commented 11 months ago

The paper is in the 109-joss branch, but I don't think they look at the code on the paper branch? Maybe to be safe I can try to rebase it...

TheLostLambda commented 11 months ago

Actually looks like I've already done that — whoops!

The PR shows only the paper files are new (even though the commits are still a bit different from master...

https://github.com/Mesnage-Org/pgfinder/pull/130/files

ns-rse commented 11 months ago

Thanks @TheLostLambda and apologies for not checking the PR this week, I've been on leave.