Mesnage-Org / pgfinder

Peptidoglycan MS1 Analysis Tool
https://mesnage-org.github.io/pgfinder
GNU Lesser General Public License v3.0
4 stars 2 forks source link

The Great Repo Merge #227

Closed TheLostLambda closed 1 year ago

TheLostLambda commented 1 year ago

This should close #206 !

It's way too late at night for me to finish this, so this is just the histories stuck together for now!

As a fun new fact I've learnt, GitHub does not let you open a PR unless it's a fork or branch — doesn't matter if you cloned the repo and reuploaded it elsewhere with a fully compatible history. It seems no fork button, no PR. At least that's the understanding I've come away with this evening!

That's why this fork comes from a random, sketchy org that I made with some mates in high-school...

Things left to to:

bobturneruk commented 1 year ago

Looking sound. It's going to need an explanation of what's in what dir in the readme. Also some GHA workflow changes for new paths.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (22890e0) 69.37% compared to head (36e79a6) 69.37%. Report is 14 commits behind head on master.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #227 +/- ## ======================================= Coverage 69.37% 69.37% ======================================= Files 11 11 Lines 493 493 ======================================= Hits 342 342 Misses 151 151 ``` | [Files Changed](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org) | Coverage Δ | | |---|---|---| | [lib/pgfinder/\_\_init\_\_.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL19faW5pdF9fLnB5) | `100.00% <ø> (ø)` | | | [lib/pgfinder/errors.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL2Vycm9ycy5weQ==) | `100.00% <ø> (ø)` | | | [lib/pgfinder/find\_pg.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL2ZpbmRfcGcucHk=) | `0.00% <ø> (ø)` | | | [lib/pgfinder/gui/internal.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL2d1aS9pbnRlcm5hbC5weQ==) | `95.45% <ø> (ø)` | | | [lib/pgfinder/gui/shim.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL2d1aS9zaGltLnB5) | `0.00% <ø> (ø)` | | | [lib/pgfinder/io.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL2lvLnB5) | `0.00% <ø> (ø)` | | | [lib/pgfinder/logs/logs.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL2xvZ3MvbG9ncy5weQ==) | `45.45% <ø> (ø)` | | | [lib/pgfinder/pgio.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL3BnaW8ucHk=) | `78.00% <ø> (ø)` | | | [lib/pgfinder/utils.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL3V0aWxzLnB5) | `100.00% <ø> (ø)` | | | [lib/pgfinder/validation.py](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org#diff-bGliL3BnZmluZGVyL3ZhbGlkYXRpb24ucHk=) | `62.79% <ø> (ø)` | | | ... and [1 more](https://app.codecov.io/gh/Mesnage-Org/pgfinder/pull/227?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Mesnage-Org) | |

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TheLostLambda commented 1 year ago

@bobturneruk @ns-rse This is nearly done! I'm just writing some readme / contributing files, but unfortunately for the conference we're probably going to need to merge this today! Let me know if either of you get a chance to poke around / have any thoughts!

TheLostLambda commented 1 year ago

Sorry for the rushed merge! Needed to finalise the URL for steph's poster!

I'll address the last two bits in another PR!