Extended ruff config + CI reference fix

[cpelley]

Following on from the previous PR which switched to ruff. We now include E (pycodestyle), W and I (isort) rules. Making it equivalent to what we had before ruff (flake8, isort, black), except without the McCabe for now.

See pyproject.toml changes

Additionally:

• In my haste I didn't modify the reference pytest call in CI to match what I did to the other. That is, addressing hidden failure and running a failing logging test. See CI changes.

Everything else if changes to address any formatting changes.

Issues

• https://github.com/MetOffice/improver_suite/issues/2214

Note

Could we include more rules?? All rules perhaps?? Yes, but this PR is only to reintroduce rules we had in place as part of flake8 + isort + black right now. The future configuration of ruff needs some further thought.

[cpelley]

ping @s-boardman of potential interest