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MetaCell / geppetto-hnn

Geppetto extension for HNN
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Unmatched Parameters #87

Closed afonsobspinto closed 5 years ago

afonsobspinto commented 5 years ago

Hello. From comparing the dumped cfg (after using setCfgFromFile) with the cfg.py configuration I noticed that the following parameters don't match. I would guess that most of them are parameters that we don't need/want to export in HNN but I would prefer to have some confirmation.

{
  "hParams": {
    "clamp_resist": 0.001
  },
  "cvode_atol": 0.001,
  "rand123GlobalIndex": null,
  "createNEURONObj": true,
  "createPyStruct": true,
  "addSynMechs": true,
  "includeParamsLabel": true,
  "gatherOnlySimData": false,
  "compactConnFormat": false,
  "connRandomSecFromList": true,
  "saveCellSecs": true,
  "saveCellConns": true,
  "timing": true,
  "saveTiming": false,
  "printSynsAfterRule": false,
  "recordCellsSpikes": -1,
  "recordLFP": [],
  "saveLFPCells": false,
  "recordTime": true,
  "filename": "model_output",
  "timestampFilename": false,
  "saveMat": false,
  "saveCSV": false,
  "saveDpk": false,
  "saveHDF5": false,
  "saveDat": false,
  "backupCfgFile": [],
  "checkErrorsVerbose": false,
  "expmt_groups": "{default}",

}

Thanks

salvadord commented 5 years ago

All these are netpyne cfg parameters, that all netpyne models have. Most of them should be in cfg.py under 'NetPyNE config parameters (not part of original HNN implementation)'.

The hnn-specific params are under 'HNN original config parameters (adapted to NetPyNE)'