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pytest fails due to hardcoded paths #6

Closed yuvaramsingh94 closed 1 year ago

yuvaramsingh94 commented 1 year ago

hi, The pytest fails because of the absolute path used for loading the configurations.

/pbtech_mounts/homes064/lam4003/bin/camp_short-read-quality-control/.tests/unit/fastqc_post/data

b-tierney commented 1 year ago

Hi -- thank you for the heads up -- cc @lauren-mak

We'll get this cleaned up in the next release -- in the meantime, you should be able to still test on your system this using the example commands/the data in the repo

lauren-mak commented 1 year ago

This has been addressed in the latest update (version 0.7.0). Please pull it, go over the README.md to make sure the module has been set up properly, and see if it works. Thanks for using the CAMP short-read QC module!