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MetaSUB / metasub_utils

MIT License
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wasabi command is not found #3

Closed Xinzhao1990 closed 5 years ago

Xinzhao1990 commented 5 years ago

Description

Wasabi command is not working anymore after being updated to new version (v0.4.0)

What I Did

Paste the command(s) you ran and the output.

XinzhaodeMacBook-Pro:~ Xinzhao$ metasub wasabi download-raw-reads --help
Unable to import metasub_utils.athena.cli
Unable to import metasub_utils.bridges.cli
Unable to import metasub_utils.hudson_alpha.cli
Unable to import metasub_utils.metadata.cli
Unable to import metasub_utils.metagenscope.cli
Unable to import metasub_utils.wasabi.cli
Usage: metasub [OPTIONS] COMMAND [ARGS]...
Try "metasub --help" for help.

Error: No such command "wasabi".
dcdanko commented 5 years ago

This is an issue with packaging microlibs that is fixed in PR #4 and v0.4.1 of the package.

Installation from pypi should work now, it did on my system. In case it does not work I would recommend installing from source until the bug is fixed.

When installing now pin the version explicitly pip install metasub_utils==0.4.1 as pip may otherwise install a slightly stale version.