search

MetaboHUB-MetaToul-FluxoMet / RTMet

RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.
https://rtmet.readthedocs.io
GNU General Public License v3.0
2 stars 0 forks source link

influx cli is an unlisted dependency #24

Closed elliotfontaine closed 2 months ago

elliotfontaine commented 2 months ago

The '[setup_influxdb_cfg]' task uses the system-wide influx CLI. It isn't documented. Influx CLI doesn't have a corresponding conda package.

How to fix:

  1. Rewrite the setup task to use the Influx python API instead,
  2. Or, don't write the config to disk and dynamically give it to upload tasks instead.
  3. Or, Say in docs to install Influx CLI