Implement end-to-end testing of the workflow - Githubissues

MetaboHUB-MetaToul-FluxoMet / RTMet

RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.

https://rtmet.readthedocs.io

GNU General Public License v3.0

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Implement end-to-end testing of the workflow #29

Open elliotfontaine opened 5 months ago

elliotfontaine commented 5 months ago

The first version would be with InfluxDB disabled.

[ ] Choose test files (toy dataset)
[ ] Choose invariants
[ ] Investigate how to do tests with Cylc
[ ] Write test
[x] Setup tests as Github Actions

Choose test files (toy dataset)

Choose invariants

Which values we want to be tested (identified metabolites? etc)

Investigate how to do tests with Cylc

Might be worth to check how test-tutorial-workflow is implemented here by the Cylc dev team.

Write test

Setup tests as Github Actions