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MetabolicAtlas / standard-GEM-validation

Validate standard-GEM repositories
GNU General Public License v3.0
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feat: use dockerized memote setup #9

Closed mihai-sysbio closed 1 year ago

mihai-sysbio commented 1 year ago

This PR addresses this comment about using a Docker image of memote. Moreover, it adds an index.json containing a JSON list of GEMs to be run through the validation pipeline.

mihai-sysbio commented 1 year ago

This will be relevant for a detailed report later, I think.

I'm not sure who would want to see the entire report, and why. Storing large JSONs indefinitely in the results file doesn't sound like the best place, so to find another solution more details about the use-case are needed.

mihai-sysbio commented 1 year ago

In order to save a few Actions runs. I will go ahead and merge this PR. Any remaining issue should be resolved in the target branch feat/memote. There, the discussion can continue about which JSON scores to isolate in addition to the total score (original discussion).