MetabolicAtlas / standard-GEM

The standard for open-source GEMs on GitHub
https://www.biorxiv.org/content/10.1101/2023.03.21.512712
Creative Commons Attribution 4.0 International
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Clarify naming convention for model files #38

Open mihai-sysbio opened 1 year ago

mihai-sysbio commented 1 year ago

All model files must be named based on the repository name and versioned explicitly. Example: yeast-GEM-0.1.0.json. It must also include a release.md file that describes the release notes of the different versions of the model and the data/code used to generate the new version from the previous one. This will help standardize the model generation/ customization process and thus improve the reproducibility and maintainability.