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Mic92 / nixos-shell

Spawns lightweight nixos vms in a shell
MIT License
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Getting setup-hook: cannot execute binary file error #38

Closed 573 closed 3 years ago

573 commented 3 years ago

When trying to utilise nixos-shell as remote builder host for my WSL client I accidentally came up with this minimal example - also my issue (note that this command was executed inside the nixos-shell session):

ssh nixos-shell NIX_PATH=nixpkgs=http://nixos.org/channels/nixpkgs-unstable/nixexprs.tar.xz nix-shell -p nix-info --run "nix-info -m" unpacking 'http://nixos.org/channels/nixpkgs-unstable/nixexprs.tar.xz'... these paths will be fetched (0.05 MiB download, 0.28 MiB unpacked): /nix/store/l31qzdd26g3rgn2a9h89sl7yjf71yim1-bash-interactive-4.4-p23-dev copying path '/nix/store/l31qzdd26g3rgn2a9h89sl7yjf71yim1-bash-interactive-4.4-p23-dev' from 'https://cache.nixos.org'... /nix/store/qdf49mvm79r83n9c9s7pkmmjqwhrw8jv-stdenv-linux/setup: line 519: source: /nix/store/1xmid45vayj917km02cvkwq5054mz2ms-binutils-wrapper-2.35.1/nix-support/setup-hook: cannot execute binary file

The exact error I got when trying to build i. e. pandoc remotely as in:

NIX_PATH=nixpkgs=http://nixos.org/channels/nixpkgs-unstable/nixexprs.tar.xz nix-build -E '(with import <nixpkgs> { system = "x86_64-linux"; }; pkgs.haskell.packages.ghc884.ghcWithPackages (pkgs: [pkgs.pandoc]))' --option builders 'ssh://nixos-shell' # this got me the error as well, see below
NIX_PATH=nixpkgs=http://nixos.org/channels/nixpkgs-unstable/nixexprs.tar.xz nix-build -E '(with import <nixpkgs> {}; pkgs.haskell.packages.ghc884.ghcWithPackages (pkgs: [pkgs.pandoc]))' # while this built

Did I do something unusual here ?

The error log:

copying path '/nix/store/6zinf42qdyfx528wgl428s9ljx80s86j-JuicyPixels-3.3.5.tar.gz' from 'https://cache.nixos.org'...
copying path '/nix/store/qk5hji9phm573cp51c97nhph4v6bwwmh-ghc-8.8.4-doc' from 'https://cache.nixos.org'...
copying path '/nix/store/q427hhgznng6cg7510ir4cm41m32hjmn-hscolour-1.24.4' from 'https://cache.nixos.org'...
copying path '/nix/store/i8zrgs1k4w633cgn967ypfhimlpkmnj3-ghc-8.8.4' from 'https://cache.nixos.org'...
copying path '/nix/store/wsjhnhvpaw50jw7zm2zbf818iajr7kq5-primitive-0.7.1.0-doc' from 'https://cache.nixos.org'...
copying path '/nix/store/fzwylip49bbs36534986di1n47jzclkl-zlib-0.6.2.3-doc' from 'https://cache.nixos.org'...
copying path '/nix/store/fzsrycbcmm4kfhpsahnmv1pacrs2agh2-primitive-0.7.1.0' from 'https://cache.nixos.org'...
copying path '/nix/store/wpwfs183zgr5z258rpxaxxykfmh23lsr-vector-0.12.3.0-doc' from 'https://cache.nixos.org'...
copying path '/nix/store/pi84scwxfxrif0qyz9vrlk6ff0jh58i7-zlib-0.6.2.3' from 'https://cache.nixos.org'...
copying path '/nix/store/faaa5szmazy4qasy2p99igwvzl2cadxy-vector-0.12.3.0' from 'https://cache.nixos.org'...
/nix/store/qdf49mvm79r83n9c9s7pkmmjqwhrw8jv-stdenv-linux/setup: line 519: source: /nix/store/1xmid45vayj917km02cvkwq5054mz2ms-binutils-wrapper-2.35.1/nix-support/setup-hook: cannot execute binary file
builder for '/nix/store/j1m8vd2qb047ims91gnkazlh54184dqx-JuicyPixels-3.3.5.drv' failed with exit code 126
573 commented 3 years ago

Is this related to the setting

{...}: {
nix.nixPath = [
  "nixpkgs=${pkgs.path}"
];
}

Or better asked is that needed ?

Mic92 commented 3 years ago

NIX_PATH in the vm should not have any effect when doing remote building. There is no nix code evaluated inside the VM in this case. I would say your issues is maybe more related to what you are trying to build. Maybe check what is inside /nix/store/1xmid45vayj917km02cvkwq5054mz2ms-binutils-wrapper-2.35.1/nix-support/setup-hook inside the VM.

573 commented 3 years ago

@Mic92 good point.

I just can't explain why setup-hook is ~binary~ full of zeros now in nixos-shell. When I probe on WSL

$ head -c 16 /nix/store/1xmid45vayj917km02cvkwq5054mz2ms-binutils-wrapper-2.35.1/nix-support/setup- hook | hexdump -C 00000000 23 20 53 69 6e 63 65 20 74 68 65 20 73 61 6d 65 |# Since the same| 00000010

vs. when I probe on host (nixos-shell)

[root@nixos:~/nixos-shell-14-07-2021]# head -c 16 /nix/store/1xmid45vayj917km02cvkwq5054mz2ms-binutils-wrapper-2.35.1/nix-support/setup -hook | hexdump -C 00000000 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 |................| 00000010

573 commented 3 years ago

Without virtualisation.writableStoreUseTmpfs = false; in vm.nix I get

# NIX_PATH=nixpkgs=http://nixos.org/channels/nixpkgs-unstable/nixexprs.tar.xz nix-shell -p nix-info --run "nix-info -m"

Rebuilding pandoc no matter if in WSL directly or in nixos-shell then leads to a different error:

/nix/store/iy1pq628dl0pdmrkbx9nnb4z1w6kqgn0-zip-archive-0.4.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/qb3klgj10h53z2g6k9bzazxx86y4cwrh-xml-1.3.14/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/x83pdbwc62zw47pagzajdjb73xmnfiaf-texmath-0.12.3/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/5fq0yhg2xn06jdihdi2qk18zr8n6p1gh-tagsoup-0.14.8/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/m4cxncd5kz2x4cfc3sg61c0r1i6h7s21-pretty-show-1.10/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/1g38kqc4giv64vldii6h7vvp3iisis79-utf8-string-1.0.2/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/a76v9cawji1innxqlxpd9agd28rsz1vj-ansi-terminal-0.11/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/hcsqyjzkha6v9p9jzg3mjrk80s3h66vw-skylighting-core-0.10.5.2/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/ix27vaph4dzgr2gbymy8ir93ym4bmc2g-skylighting-0.10.5.2/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/p00mbkbg05sa6dh86fgbj23cy633d85p-SHA-1.6.4.4/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/ycbl22mb419pkl27nf49lysxr3j9qz60-JuicyPixels-3.3.5/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/p1hj4qmxs66dx0lfwfz4v9ddc9xnbd39-jira-wiki-markup-1.4.0/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/ads3bxak0sjlngxns340wz84mispynak-ipynb-0.1.0.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/wb6cw6g9llmphc44vf3b3f2f2s7vjyhn-http-client-tls-0.3.5.3/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/s165mn27n5im8kjsj9nnc83g3byssa05-mime-types-0.1.0.9/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/lnfa6x1c9pygfs9b3jajz3dg74dy34qn-http-types-0.12.3/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/a6bbbbvrvc6yf8j1ca1a1rv5lbvyzzwx-cookie-0.4.5/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/wv72x5nnlxdr434abzwfpc2vk1sgw7zp-http-client-0.6.4.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/c82s78hlwimysslsrjml1gyrxq7ibc87-HTTP-4000.3.16/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/cp620rpq4aikbab2nz4vhp7xvq4dz4kz-hslua-module-text-0.3.0.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/qpm2nj1csjc193srjc2mwymni4wbw81z-temporary-1.3/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/ssm1052yacv3hj8xdmpz0y2h6d4kqdkc-hslua-module-system-0.2.2.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/7ivm91476rma618ci9fj2ii2s4ylmmmh-hslua-module-path-0.1.0.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/y34gg5yfrg3nj0q79y2b3jz4zdkyj5qv-hslua-1.3.0.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/ik18zm3ycrpjm01impwadw3rmrvyxz86-haddock-library-1.10.0/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/0dk49dp5cqz5dhs7jxvndy4047s5wfv1-Glob-0.10.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/f83c2n3vd9b5as0f66na4lpdqcbmqqkk-errors-2.3.0/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/0az2r9jj15v18b26yhyx2cl0h7hj4zcd-base16-bytestring-1.0.1.0/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/70l3xrwz33594b4nqa87rycj48yfv42s-text-conversions-0.3.1/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/n1i59w7w92wx403cwxqdm7m8kfx4vgjn-HsYAML-0.2.1.0/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/536dn8sg5jlwg6kfzykdqmmypgmdsqpv-doctemplates-0.9/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/ks972bwsd97xk41aab45y5vgkd5vis44-doclayout-0.3.0.2/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/b0h3gwbd04m5cjlf9wmyb5q4g7928j9g-x509-system-1.6.6/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/xr32sahm64dl9783qwpa4cp7m58ff28p-x509-validation-1.6.11/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/72sx0z7nkh85m5wi18z9llxxd48243p4-x509-store-1.6.7/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/slv3pddxzlzbbdpvslp155y0m5hi60bm-pem-0.2.4/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/mik2gfcsdfcgx952wsx46jakqa0dpk43-asn1-parse-0.9.5/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/gvphxvnmygjcb211vc43q47jxygzlbpz-x509-1.7.5/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/q14qymddhsnxz9b1qb2f182if2y42ls1-cryptonite-0.29/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/d3gfn2frqh8j386lxf9pkyyficzdhik9-memory-0.15.0/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs 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/nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs /nix/store/x2s3x19bz9w95033l5x5dyyl6zfzhn8s-ghc-8.10.4/nix-support: propagated-build-inputs: /nix/store/md2b1c15x6a9h96n0g2c5h8as5jhsvhk-digest-0.0.1.2/nix-support/propagated-build-inputs ghc-pkg: Couldn't open database /nix/store/d6imznim4pfdaxywg46jiff0vpdnzs0s-ghc-8.10.4-with-packages/lib/ghc-8.10.4/package.conf.d for modification: {handle: /nix/store/d6imznim4pfdaxywg46jiff0vpdnzs0s-ghc-8.10.4-with-packages/lib/ghc-8.10.4/package.conf.d/package.cache.lock}: hLock: invalid argument (Invalid argument)

(nix-store --read-log /nix/store/5nj2n127irk1lwc0fb33475wdjalw0lk-ghc-8.10.4-with-packages.drv)

573 commented 3 years ago

My first attempt on garbage collecting (nix-collect-garbage -d) failed (had some disk space errors causing incomplete builds earlier) due to database inconsistencies, https://github.com/NixOS/nix/issues/2218#issuecomment-423853256 helped

sqlite3 /nix/var/nix/db/db.sqlite .dump | sed -e '/redmine/d' | sqlite3 /tmp/db.sqlite
mv /tmp/db.sqlite /nix/var/nix/db/db.sqlite

The garbage collection then succeeded and I was successful building pandoc on the remote host as well:

$ NIX_PATH=nixpkgs=http://nixos.org/channels/nixpkgs-unstable/nixexprs.tar.xz nix-build -E '(with import <nixpkgs> { system = "x86_64-linux"; }; pkgs.haskell.packages.ghc884.ghcWithPackages (pkgs: [pkgs.pandoc]))' --option builders 'ssh://nixos-shell'