MicroB3-IS / osd-analysis

Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data
Apache License 2.0
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create tables with otu taxa mapping for LGC 16S/18S datasets #5

Closed renzok closed 9 years ago

ikostadi commented 9 years ago

Kudos to @genomewalker for generating those. They can be found in the respective 'otu_table' folders (direct links below). Be advised, the taxonomy is (quality) filtered. That means, if the quality score of the blast hit which was used to assign the taxonomy to the respective OTU reference is less than 93%, the taxonomy is set to 'No Relative'. The formula for the quality score is (query_coverage+identity)/2 (see the respective analysis reports).

osd2014_16S_lgc_otu_taxonomy.tsv.gz osd2014_16S_lgc_otu_taxonomy.tsv.gz