ERROR :parallel not detected. - Githubissues

MicrobeLab / DeepMicrobes

DeepMicrobes: taxonomic classification for metagenomics with deep learning

https://doi.org/10.1093/nargab/lqaa009

Apache License 2.0

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ERROR :parallel not detected. #8

Open chulghim opened 3 years ago

chulghim commented 3 years ago

run command: (pip-tensorflow) (DeepMicrobes) [xxxx@compute40 DeepMicrobes]$ tfrec_predict_kmer.sh -f ../test/SRR5935743_clean_1.fastq -r ../test/SRR5935743_clean_2.fastq -t fastq -v ../vocab/tokens_merged_12mers.txt -o srr -s 4000000 -k 12

return : ERROR : parallel not detected

Help me.

MicrobeLab commented 3 years ago

The parallel is included in bin. You could add it to path. Alternatively, you could install it using the command: (wget -O - pi.dk/3 || curl pi.dk/3/) | bash

chulghim commented 3 years ago

Thanks a lot. it's solved.

What's your tensorflow version?

Best Regards,

chul

MicrobeLab commented 3 years ago

The version is 1.9.0