Module compilation error for test data

[ellyyuyang]

Hi, thanks for this tool! I am trying to run it through nextflow conda for the test data by running the suggested: nextflow run main_AMR++.nf -profile local

However, I am getting the following error:

N E X T F L O W  ~  version 20.07.1
Launching `main_AMR++.nf` [nauseous_cajal] - revision: c52e346ad8
A M R + +    N F   P I P E L I N E

 reads        : /AMRplusplus/data/raw/*_R{1,2}.fastq.gz
 output       : test_results
Module compilation error
- file : /AMRplusplus/subworkflows/../modules/Trimming/trimmomatic.nf
- cause: expecting '}', found ',' @ line 41, column 51.
   le_id}.trimmomatic.stats.log"), emit: tr
                                 ^

1 error

Thanks for your help!

[ellyyuyang]

This issue was resolved by upgrading the nextflow version.

Best, Yu