issues
search
Microbial-Ecology-Group
/
AMRplusplus
AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
https://www.meglab.org/
GNU General Public License v3.0
25
stars
8
forks
source link
Host rm change to samtools, name handling
#22
Closed
EnriqueDoster
closed
1 year ago
EnriqueDoster
commented
1 year ago
merging changes to host removal. now using samtools to better multi-thread and output zipped fastq files
changed name handling, now all sample Id's will only consist of the text to the left of the first period in fastq files.
added a the "align" pipeline to just carry out alignment to a bwa database